Variant report

Variant	rs6549275
Chromosome Location	chr3:70187958-70187959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:70187766-70188093	MCF10A-Er-Src	breast:	n/a	chr3:70187915-70187926
2	CEBPB	chr3:70187707-70188415	A549	lung:	n/a	chr3:70188155-70188166
3	FOS	chr3:70187753-70188099	MCF10A-Er-Src	breast:	n/a	chr3:70187915-70187926
4	SP1	chr3:70187684-70188187	A549	lung:	n/a	n/a
5	FOS	chr3:70187770-70188094	MCF10A-Er-Src	breast:	n/a	chr3:70187915-70187926
6	FOSL2	chr3:70187717-70188136	A549	lung:	n/a	n/a
7	GATA3	chr3:70187705-70188151	A549	lung:	n/a	n/a
8	SP1	chr3:70187737-70188133	A549	lung:	n/a	n/a
9	FOXA2	chr3:70187681-70188202	A549	lung:	n/a	n/a
10	FOS	chr3:70187693-70188114	HUVEC	blood vessel:	n/a	chr3:70187915-70187926
11	GATA2	chr3:70187492-70188038	HUVEC	blood vessel:	n/a	chr3:70187822-70187836
12	FOSL2	chr3:70187535-70188309	A549	lung:	n/a	n/a
13	GATA3	chr3:70187536-70188371	A549	lung:	n/a	n/a
14	FOS	chr3:70187758-70188103	MCF10A-Er-Src	breast:	n/a	chr3:70187915-70187926
15	TCF12	chr3:70187642-70188269	A549	lung:	n/a	n/a

Variant related genes	Relation type
UQCRHP4	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10084760	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12492173	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12494970	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13318539	0.90[ASN][1000 genomes]
rs13324738	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13327166	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13327169	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17006722	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34951219	0.82[ASN][1000 genomes]
rs4132502	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4132504	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4974261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59260955	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59312808	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59403967	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6549272	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6549281	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6806567	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6807288	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73105970	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73105989	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73108022	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73108030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73108033	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7340562	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9310182	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9811076	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9814727	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9817459	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9817902	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9824741	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9849979	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9856733	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9857007	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9868919	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9880622	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9881087	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70186200-70188200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:70187400-70188200	Enhancers	A549	lung
3	chr3:70187800-70188200	Enhancers	NH-A	brain

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