Variant report

Variant	rs9824741
Chromosome Location	chr3:70182149-70182150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10084760	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12494970	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13324738	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13327166	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13327169	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17006722	0.84[AMR][1000 genomes]
rs4132502	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4132504	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs4974261	0.95[MEX][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59260955	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59312808	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6549275	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6549281	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6806567	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6807288	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73108022	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73108030	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73108033	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7340562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9310182	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9817459	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9817902	0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9849979	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9868919	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9880622	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9824741	SUCLG2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70166000-70182400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:70169600-70182400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:70172800-70186800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:70181600-70182600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr3:70182000-70182600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:70182000-70182800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr3:70182000-70183000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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