Variant report

Variant	rs6806567
Chromosome Location	chr3:70200275-70200276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10084760	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12492173	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12494970	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13318539	0.84[ASN][1000 genomes]
rs13324738	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13327166	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13327169	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17006722	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34951219	0.82[ASN][1000 genomes]
rs4132502	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4132504	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4974261	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59260955	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59312808	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59403967	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6549272	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6549275	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6549281	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6807288	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73105970	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73105989	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73108022	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73108030	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73108033	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7340562	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9310182	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9811076	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9814727	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9817459	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9817902	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9824741	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9849979	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9856733	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9857007	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9868919	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9880622	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9881087	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv834725	chr3:70199671-70395784	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70198400-70200400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:70199200-70200600	Enhancers	Pancreatic Islets	Pancreatic Islet

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