Variant report

Variant	rs17017120
Chromosome Location	chr1:211190922-211190923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211079490..211081106-chr1:211190726..211193541,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10494930	1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.88[JPT][hapmap];0.95[TSI][hapmap];0.82[ASN][1000 genomes]
rs12082952	1.00[CHB][hapmap];0.84[GIH][hapmap];0.84[ASN][1000 genomes]
rs17017087	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2062674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4072437	0.82[AMR][1000 genomes]
rs4951489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4951494	0.82[AMR][1000 genomes]
rs4951684	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap]
rs4951685	0.82[ASN][1000 genomes]
rs4951690	0.86[ASN][1000 genomes]
rs4951691	0.86[ASN][1000 genomes]
rs4951692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4951696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4951697	0.81[CHD][hapmap]
rs4951703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951714	0.82[AMR][1000 genomes]
rs6671566	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7522148	1.00[YRI][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:211185200-211194000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:211185400-211191800	Weak transcription	HSMMtube	muscle
6	chr1:211187000-211198200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:211187200-211191800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:211187400-211191800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:211187600-211198200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:211189200-211193000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:211189600-211191800	Weak transcription	HSMM	muscle
12	chr1:211190200-211191800	Weak transcription	Brain Substantia Nigra	brain
13	chr1:211190600-211191000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:211190600-211191000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:211190600-211191000	Enhancers	K562	blood
16	chr1:211190600-211191400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:211190600-211191600	Enhancers	Hela-S3	cervix
18	chr1:211190600-211192000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr1:211190600-211198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:211190800-211191000	Enhancers	Osteobl	bone
21	chr1:211190800-211191800	Weak transcription	A549	lung

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