Variant report

Variant	rs17018170
Chromosome Location	chr1:212085443-212085444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212074801..212076576-chr1:212084701..212087247,2	MCF-7	breast:
2	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1052351	0.81[EUR][1000 genomes]
rs17018182	1.00[EUR][1000 genomes]
rs17018199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17018234	0.81[EUR][1000 genomes]
rs17018237	0.81[EUR][1000 genomes]
rs17018244	0.81[EUR][1000 genomes]
rs17018248	0.81[EUR][1000 genomes]
rs17018249	0.81[EUR][1000 genomes]
rs17018262	0.81[EUR][1000 genomes]
rs17018284	0.81[EUR][1000 genomes]
rs17018310	0.81[EUR][1000 genomes]
rs17018311	0.81[EUR][1000 genomes]
rs17018329	0.81[EUR][1000 genomes]
rs17018332	0.81[EUR][1000 genomes]
rs17018335	0.81[EUR][1000 genomes]
rs17018340	0.81[EUR][1000 genomes]
rs17018342	0.81[EUR][1000 genomes]
rs17018375	0.81[EUR][1000 genomes]
rs17018392	0.81[EUR][1000 genomes]
rs17018399	0.81[EUR][1000 genomes]
rs1890345	0.81[EUR][1000 genomes]
rs1933594	0.81[EUR][1000 genomes]
rs2358385	0.81[EUR][1000 genomes]
rs3923329	0.87[EUR][1000 genomes]
rs41275374	0.81[EUR][1000 genomes]
rs41502452	0.81[EUR][1000 genomes]
rs5780667	0.81[EUR][1000 genomes]
rs59418388	0.94[EUR][1000 genomes]
rs73091032	1.00[EUR][1000 genomes]
rs73091037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212079600-212087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:212080400-212087600	Enhancers	Fetal Intestine Large	intestine
3	chr1:212080800-212087000	Enhancers	Fetal Intestine Small	intestine
4	chr1:212081800-212085800	Enhancers	Liver	Liver
5	chr1:212082400-212086600	Enhancers	A549	lung
6	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
7	chr1:212084000-212085600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr1:212084000-212085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:212084000-212086000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr1:212084000-212086000	Enhancers	HepG2	liver
11	chr1:212084200-212085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:212084200-212085800	Enhancers	Stomach Mucosa	stomach
13	chr1:212084200-212090800	Weak transcription	Adipose Nuclei	Adipose
14	chr1:212084400-212085800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:212084400-212086000	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr1:212084800-212086600	Enhancers	Duodenum Mucosa	Duodenum
17	chr1:212084800-212089200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr1:212084800-212089800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:212084800-212090800	Weak transcription	Pancreas	Pancrea
20	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
21	chr1:212085000-212089000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr1:212085000-212090600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:212085200-212085600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:212085200-212085800	Enhancers	HMEC	breast
25	chr1:212085200-212086000	Flanking Active TSS	Hela-S3	cervix
26	chr1:212085200-212086000	Bivalent Enhancer	Osteobl	bone
27	chr1:212085400-212085600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon

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