The 2.0 version of rSNPBase

Variant report

Variant rs17024282
Chromosome Location chr2:39963273-39963274
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:39944400-39976600 Weak transcription Fetal Brain Male brain
2 chr2:39951000-39963600 Weak transcription Pancreas Pancrea
3 chr2:39951000-39964800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr2:39951200-39964800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr2:39951400-39963800 Weak transcription H9 Cell Line embryonic stem cell
6 chr2:39952000-39964800 Weak transcription Rectal Smooth Muscle rectum
7 chr2:39956200-39966400 Weak transcription Small Intestine intestine
8 chr2:39956600-39963400 Weak transcription Ovary ovary
9 chr2:39956800-39964600 Weak transcription Placenta Amnion Placenta Amnion
10 chr2:39957400-39971200 Strong transcription Primary T cells from cord blood blood
11 chr2:39957600-39964200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr2:39958400-39963800 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr2:39958800-39964400 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr2:39958800-39964600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr2:39959000-39971200 Strong transcription Fetal Thymus thymus
16 chr2:39959400-39966400 Strong transcription Fetal Intestine Large intestine
17 chr2:39959400-39967400 Strong transcription A549 lung
18 chr2:39959400-39971000 Strong transcription Monocytes-CD14+_RO01746 blood
19 chr2:39959400-39974200 Strong transcription Primary B cells from cord blood blood
20 chr2:39959600-39963800 Weak transcription Esophagus oesophagus
21 chr2:39959600-39967200 Strong transcription HepG2 liver
22 chr2:39959800-39967000 Genic enhancers Breast Myoepithelial Primary Cells Breast
23 chr2:39960000-39964800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr2:39960000-39964800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr2:39960000-39969000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr2:39960000-39971000 Strong transcription K562 blood
27 chr2:39960000-39971200 Strong transcription Fetal Muscle Trunk muscle
28 chr2:39960000-39971400 Strong transcription Primary hematopoietic stem cells short term culture blood
29 chr2:39960000-39971800 Strong transcription Primary monocytes fromperipheralblood blood
30 chr2:39960200-39963800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr2:39960200-39963800 Weak transcription Brain Anterior Caudate brain
32 chr2:39960200-39965000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr2:39960200-39971000 Strong transcription Fetal Muscle Leg muscle
34 chr2:39960200-39973800 Strong transcription Primary hematopoietic stem cells blood
35 chr2:39960200-39987200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr2:39960400-39965000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr2:39960400-39970200 Strong transcription GM12878-XiMat blood
38 chr2:39960400-39973600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr2:39960400-39983000 Weak transcription Stomach Mucosa stomach
40 chr2:39960600-39963800 Weak transcription Brain Cingulate Gyrus brain
41 chr2:39960600-39963800 Weak transcription Psoas Muscle Psoas
42 chr2:39960600-39964600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr2:39960800-39964600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr2:39960800-39964800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr2:39961000-39966200 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr2:39961200-39964000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr2:39961200-39974600 Strong transcription Primary T helper cells fromperipheralblood blood
48 chr2:39961400-39964200 Strong transcription HUES64 Cell Line embryonic stem cell
49 chr2:39961400-39969800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr2:39961400-39984200 Weak transcription Colonic Mucosa Colon

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Last update: Aug 31, 2015