Variant report

Variant	rs17044026
Chromosome Location	chr1:217001114-217001115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12139635	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339340	0.99[ASN][1000 genomes]
rs1339358	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1370143	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542001	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2576237	0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2789719	0.99[ASN][1000 genomes]
rs2789726	0.80[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap]
rs2813664	0.84[JPT][hapmap]
rs2813665	0.83[JPT][hapmap]
rs2813672	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2813675	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3738490	0.94[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.99[ASN][1000 genomes]
rs6686329	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766158	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs766159	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216989000-217005800	Weak transcription	Left Ventricle	heart
2	chr1:216994600-217004000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:216996400-217004400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:216998600-217004000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:216999200-217003800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:216999200-217003800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:216999400-217003200	Weak transcription	Fetal Heart	heart
8	chr1:217000400-217003600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:217000600-217001400	Enhancers	Fetal Intestine Large	intestine
10	chr1:217000800-217001200	Enhancers	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links