Variant report

Variant	rs2813672
Chromosome Location	chr1:216981725-216981726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12139635	0.99[ASN][1000 genomes]
rs1339340	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339358	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1370143	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1542001	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17044026	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2576237	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2789719	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789726	0.85[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap]
rs2813663	0.88[ASW][hapmap]
rs2813664	0.84[JPT][hapmap]
rs2813665	0.83[JPT][hapmap]
rs2813668	0.82[AMR][1000 genomes]
rs2813673	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2813675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3738490	0.83[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs6686329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs766158	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs766159	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216979000-216986200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:216979400-216983000	Weak transcription	Psoas Muscle	Psoas
3	chr1:216979600-216983200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:216979800-216985000	Weak transcription	Fetal Heart	heart
5	chr1:216979800-216985200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:216979800-216988800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:216979800-216989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:216980000-216984800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:216980200-216986400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:216980200-216987400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:216980400-216988000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:216981200-216986000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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