Variant report

Variant	rs2813663
Chromosome Location	chr1:216974886-216974887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2789726	0.81[GIH][hapmap]
rs2813664	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2813665	1.00[CEU][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs2813667	0.90[JPT][hapmap]
rs2813672	0.88[ASW][hapmap]
rs2813673	0.88[ASW][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2813663	USH2A	cis	parietal	SCAN
rs2813663	GPATCH2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216973600-216977200	Weak transcription	Fetal Heart	heart
2	chr1:216974200-216976400	Weak transcription	Psoas Muscle	Psoas
3	chr1:216974800-216978600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links