Variant report

Variant	rs766159
Chromosome Location	chr1:216987293-216987294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11117706	1.00[MKK][hapmap]
rs12139635	0.99[ASN][1000 genomes]
rs1339340	1.00[ASN][1000 genomes]
rs1339358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370143	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1542001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17044026	0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.99[ASN][1000 genomes]
rs2576237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789719	1.00[ASN][1000 genomes]
rs2789726	0.86[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap]
rs2813664	0.84[JPT][hapmap]
rs2813665	0.83[JPT][hapmap]
rs2813672	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2813673	0.81[CHB][hapmap];0.94[GIH][hapmap]
rs2813675	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3738490	0.84[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs6686329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs766158	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762163	chr1:216982140-217015625	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216979800-216988800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:216979800-216989000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:216980200-216987400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:216980400-216988000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:216983200-216988600	Weak transcription	Right Atrium	heart
6	chr1:216983200-216989200	Weak transcription	Gastric	stomach
7	chr1:216983600-216988600	Weak transcription	Left Ventricle	heart
8	chr1:216983600-216988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:216985000-216987600	Weak transcription	Fetal Kidney	kidney
10	chr1:216985000-216988600	Enhancers	Fetal Heart	heart
11	chr1:216985200-216988400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:216985400-216988200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:216985400-216988400	Weak transcription	Fetal Intestine Small	intestine
14	chr1:216985400-216989000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:216985600-216988400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:216985800-216989000	Weak transcription	Fetal Intestine Large	intestine
17	chr1:216986000-216987800	Enhancers	HSMMtube	muscle
18	chr1:216986200-216987600	Enhancers	Psoas Muscle	Psoas
19	chr1:216986400-216988600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:216986400-216989600	Enhancers	Fetal Muscle Leg	muscle
21	chr1:216986600-216987400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:216986600-216987800	Weak transcription	Fetal Lung	lung
23	chr1:216986600-216988400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:216986600-216988800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr1:216986600-216988800	Weak transcription	Brain Angular Gyrus	brain
26	chr1:216986600-216988800	Weak transcription	HSMM	muscle
27	chr1:216986800-216988400	Weak transcription	Brain Anterior Caudate	brain
28	chr1:216986800-216988400	Weak transcription	Brain Substantia Nigra	brain
29	chr1:216986800-216988600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:216987000-216988800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:216987000-216991000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr1:216987200-216987400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr1:216987200-216987400	Enhancers	Brain Germinal Matrix	brain

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