Variant report

Variant	rs17073972
Chromosome Location	chr6:144944469-144944470
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10499232	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs11155364	0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs11155365	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs11155370	0.82[JPT][hapmap]
rs12209027	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs12661566	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs12662483	1.00[CEU][hapmap];0.80[CHB][hapmap];0.80[ASN][1000 genomes]
rs12662875	0.80[ASN][1000 genomes]
rs12664494	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs17073995	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs17074004	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1918751	0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1918752	0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1980379	0.87[JPT][hapmap]
rs1997252	0.84[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2056744	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2293536	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs3811100	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs3950347	0.81[ASN][1000 genomes]
rs4895646	0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4896728	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6570639	0.82[JPT][hapmap]
rs9373415	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs9373419	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9376823	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs9376824	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs9376826	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376828	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376835	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs9376837	0.83[JPT][hapmap]
rs9390170	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs9390172	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs9390174	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390175	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390176	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390178	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390184	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs9390187	0.83[JPT][hapmap]
rs9399480	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9399481	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs9399483	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9399486	0.83[JPT][hapmap]
rs9403563	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs9403564	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs9403567	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403572	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9497009	0.84[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
2	chr6:144914800-144960000	Weak transcription	Lung	lung
3	chr6:144929600-144955200	Weak transcription	HepG2	liver
4	chr6:144929800-144945600	Weak transcription	Left Ventricle	heart
5	chr6:144930000-144945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:144930800-144951800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:144930800-144957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:144939000-144945600	Weak transcription	Pancreas	Pancrea
13	chr6:144939000-144949800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:144939000-144959200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:144939200-144945800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:144939400-144949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:144940600-144945800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:144941200-144945200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:144941200-144947200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:144941400-144945400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:144941400-144951800	Weak transcription	Fetal Heart	heart
22	chr6:144943000-144947600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:144943600-144953800	Weak transcription	Gastric	stomach
24	chr6:144944200-144946200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:144944200-144951200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:144944400-144945800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links