Variant report

Variant	rs9376835
Chromosome Location	chr6:144983121-144983122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499232	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11155364	0.91[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11155365	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11155370	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12209027	0.91[CHB][hapmap];0.84[CHD][hapmap]
rs12662483	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12662875	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17073972	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs17073995	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17074004	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1980379	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2056744	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.85[MEX][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3950347	0.82[ASN][1000 genomes]
rs4895646	0.91[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs4896728	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9373419	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9373420	0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs9376826	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9376828	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9376837	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9376838	0.97[ASN][1000 genomes]
rs9386075	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386076	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs9390174	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9390175	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9390176	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9390178	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9390184	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9390187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9390188	0.97[ASN][1000 genomes]
rs9399483	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9399485	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399486	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9399489	0.82[CHD][hapmap];0.83[GIH][hapmap]
rs9403567	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9403572	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403578	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144977800-144985400	Weak transcription	Gastric	stomach
2	chr6:144978400-144983800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:144978800-144988400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:144978800-144989800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:144979800-144983600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:144979800-144985800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:144980200-144983800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:144980400-144983200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:144980400-144985000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:144980600-144983200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:144980800-144984200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:144980800-144989200	Weak transcription	Left Ventricle	heart
13	chr6:144981200-144985000	Weak transcription	Thymus	Thymus
14	chr6:144981200-144986200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:144981200-144987000	Weak transcription	Spleen	Spleen
16	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
17	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
18	chr6:144981400-144984600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:144981400-144985400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:144981600-144983600	Weak transcription	Primary B cells from cord blood	blood
21	chr6:144981600-144984800	Enhancers	NHEK	skin
22	chr6:144981800-144983600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr6:144981800-144984800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:144981800-144984800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:144982000-144983400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:144982000-144983400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:144982000-144983400	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:144982000-144984600	Weak transcription	Dnd41	blood
29	chr6:144982000-144986600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:144982000-144987000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:144982000-144987800	Weak transcription	Adipose Nuclei	Adipose
32	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:144982200-144987000	Weak transcription	NHDF-Ad	bronchial
34	chr6:144982400-144983400	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr6:144982400-144983600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:144982400-144983800	Enhancers	Brain Hippocampus Middle	brain
37	chr6:144982400-144984000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:144982400-144984400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:144982600-144983200	Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr6:144982600-144983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:144982600-144983600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:144982600-144984200	Weak transcription	Right Atrium	heart
43	chr6:144982600-144984800	Weak transcription	Small Intestine	intestine
44	chr6:144982600-144984800	Enhancers	HMEC	breast
45	chr6:144982600-144986800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:144982600-144986800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:144982600-144988000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:144982600-144996200	Weak transcription	HSMM	muscle
49	chr6:144982800-144983200	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr6:144982800-144983200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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