Variant report

Variant	rs9390184
Chromosome Location	chr6:144967564-144967565
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144966548..144968116-chr6:144970160..144972090,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10499232	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs11155364	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11155365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155366	0.81[TSI][hapmap]
rs11155370	0.91[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12209027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12662483	0.95[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs12662875	0.96[ASN][1000 genomes]
rs17073972	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs17073995	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs17074004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1918751	0.83[JPT][hapmap]
rs1918752	0.83[JPT][hapmap]
rs1980379	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1997252	0.83[JPT][hapmap]
rs2056744	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2056745	0.91[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2293536	0.83[JPT][hapmap]
rs3950347	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6907773	0.81[AMR][1000 genomes]
rs9373415	0.83[JPT][hapmap]
rs9373419	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9373420	0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376823	0.82[JPT][hapmap]
rs9376824	0.83[JPT][hapmap]
rs9376828	0.83[JPT][hapmap]
rs9376835	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9376837	0.91[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.86[ASN][1000 genomes]
rs9376838	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9386075	0.86[ASN][1000 genomes]
rs9386076	0.91[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes]
rs9390170	0.83[JPT][hapmap]
rs9390172	0.83[JPT][hapmap]
rs9390174	0.83[JPT][hapmap]
rs9390175	0.83[JPT][hapmap]
rs9390176	0.83[JPT][hapmap]
rs9390178	0.82[JPT][hapmap]
rs9390187	0.91[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390188	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9399480	0.83[JPT][hapmap]
rs9399481	0.83[JPT][hapmap]
rs9399483	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399485	0.86[ASN][1000 genomes]
rs9399486	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399488	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9399489	0.91[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap]
rs9403567	0.83[JPT][hapmap]
rs9403572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9403578	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9497009	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2763600	chr6:144965887-144970275	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
3	chr6:144948400-144973600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
5	chr6:144950200-144973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:144951000-144974800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:144951200-144974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:144951600-144975000	Weak transcription	Primary T cells from cord blood	blood
9	chr6:144951800-144977600	Weak transcription	Dnd41	blood
10	chr6:144952600-144974600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:144959600-144969200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:144959600-144974800	Weak transcription	Stomach Mucosa	stomach
13	chr6:144961200-144969000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:144961200-144970600	Weak transcription	Psoas Muscle	Psoas
15	chr6:144961400-144969400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:144961400-144978600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:144962800-144973200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:144962800-144975000	Weak transcription	Fetal Lung	lung
19	chr6:144962800-144980200	Weak transcription	Ovary	ovary
20	chr6:144963000-144973200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:144964400-144970800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:144964800-144970800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:144965000-144968800	Enhancers	HepG2	liver
24	chr6:144965000-144970600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr6:144965000-144970600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:144965000-144970600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:144965200-144967800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr6:144965400-144974200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:144965600-144982400	Weak transcription	HSMM	muscle
30	chr6:144965800-144970200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:144966000-144968200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:144966200-144969200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:144966200-144970200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:144966800-144967800	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:144966800-144968000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:144967000-144967600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:144967000-144967800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:144967000-144967800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:144967000-144967800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:144967000-144978600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:144967200-144968600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:144967200-144982000	Weak transcription	HSMMtube	muscle
43	chr6:144967400-144968200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr6:144967400-144968200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr6:144967400-144968200	Enhancers	Brain Germinal Matrix	brain
46	chr6:144967400-144969600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr6:144967400-144970800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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