Variant report

Variant	rs9403572
Chromosome Location	chr6:144970207-144970208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144968706..144970963-chr6:144974805..144976323,2	MCF-7	breast:
2	chr6:144966548..144968116-chr6:144970160..144972090,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10499232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155364	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11155365	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs11155370	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12209027	1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs12662483	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662875	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17073972	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs17073995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17074004	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs1918751	0.82[JPT][hapmap]
rs1918752	0.82[JPT][hapmap]
rs1980379	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1997252	0.83[JPT][hapmap]
rs2056744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2293536	0.82[JPT][hapmap]
rs3950347	0.94[ASN][1000 genomes]
rs4895646	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs4896728	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9373415	0.82[JPT][hapmap]
rs9373419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9373420	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9376823	0.83[JPT][hapmap]
rs9376824	0.82[JPT][hapmap]
rs9376826	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9376828	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs9376835	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376837	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs9376838	0.84[ASN][1000 genomes]
rs9386075	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390170	0.82[JPT][hapmap]
rs9390172	0.83[JPT][hapmap]
rs9390174	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs9390175	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs9390176	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs9390178	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs9390184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9390187	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9390188	0.85[ASN][1000 genomes]
rs9399480	0.83[JPT][hapmap]
rs9399481	0.83[JPT][hapmap]
rs9399483	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs9399485	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399486	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9403567	1.00[CEU][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs9403578	0.84[ASN][1000 genomes]
rs9497009	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2763600	chr6:144965887-144970275	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:144948400-144973600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
4	chr6:144950200-144973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144951000-144974800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:144951200-144974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:144951600-144975000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:144951800-144977600	Weak transcription	Dnd41	blood
9	chr6:144952600-144974600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:144959600-144974800	Weak transcription	Stomach Mucosa	stomach
11	chr6:144961200-144970600	Weak transcription	Psoas Muscle	Psoas
12	chr6:144961400-144978600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:144962800-144973200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:144962800-144975000	Weak transcription	Fetal Lung	lung
15	chr6:144962800-144980200	Weak transcription	Ovary	ovary
16	chr6:144963000-144973200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:144964400-144970800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr6:144964800-144970800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr6:144965000-144970600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:144965000-144970600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:144965000-144970600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:144965400-144974200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:144965600-144982400	Weak transcription	HSMM	muscle
24	chr6:144967000-144978600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:144967200-144982000	Weak transcription	HSMMtube	muscle
26	chr6:144967400-144970800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:144967800-144980400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:144968200-144970400	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:144968200-144970600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:144968200-144970800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:144968200-144975400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:144968200-144982000	Weak transcription	Brain Germinal Matrix	brain
33	chr6:144969200-144970400	Flanking Active TSS	Liver	Liver
34	chr6:144969200-144970400	Enhancers	Fetal Intestine Large	intestine
35	chr6:144969400-144974200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:144969400-144978800	Weak transcription	Pancreas	Pancrea
37	chr6:144969600-144970400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr6:144969600-144972400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:144969600-144972600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:144969600-144973200	Weak transcription	Small Intestine	intestine
41	chr6:144969600-144974200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:144969600-144974800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:144969800-144970600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:144969800-144973200	Enhancers	HepG2	liver
45	chr6:144970000-144971200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:144970000-144974400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr6:144970200-144970400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr6:144970200-144970600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:144970200-144970600	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr6:144970200-144971000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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