Variant report

Variant	rs17074004
Chromosome Location	chr6:144960428-144960429
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10499232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11155364	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155370	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12209027	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12212750	1.00[YRI][hapmap]
rs12216212	1.00[YRI][hapmap]
rs12662483	0.96[CHB][hapmap];0.96[JPT][hapmap];0.99[ASN][1000 genomes]
rs12662875	0.99[ASN][1000 genomes]
rs17073972	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs17073995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1980379	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2056744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2056745	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3950347	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4895646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373419	1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs9373420	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9376835	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9376837	0.91[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9376838	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9386075	0.83[ASN][1000 genomes]
rs9386076	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9390184	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390187	0.91[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390188	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9399483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9399485	0.83[ASN][1000 genomes]
rs9399486	0.91[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9399488	0.82[EUR][1000 genomes]
rs9399489	0.91[CEU][hapmap]
rs9403572	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403578	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr6:144946000-144961000	Weak transcription	Left Ventricle	heart
3	chr6:144946000-144965800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:144947000-144964800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:144947000-144969200	Weak transcription	Fetal Kidney	kidney
6	chr6:144948400-144973600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:144949000-144965200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
9	chr6:144950200-144973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:144951000-144974800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:144951200-144974800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:144951600-144975000	Weak transcription	Primary T cells from cord blood	blood
13	chr6:144951800-144977600	Weak transcription	Dnd41	blood
14	chr6:144952600-144974600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:144955400-144961000	Weak transcription	Fetal Lung	lung
16	chr6:144955600-144961000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:144956600-144965000	Weak transcription	HepG2	liver
18	chr6:144957000-144966600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:144958000-144961200	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:144958400-144962400	Weak transcription	Ovary	ovary
21	chr6:144958400-144964800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:144959000-144965800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:144959400-144962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:144959600-144960800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:144959600-144969200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:144959600-144974800	Weak transcription	Stomach Mucosa	stomach
27	chr6:144959800-144960800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:144960200-144961400	Enhancers	Fetal Heart	heart
29	chr6:144960400-144961400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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