Variant report
Variant | rs17079768 |
---|---|
Chromosome Location | chr13:66511956-66511957 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10492541 | 0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11839567 | 0.91[AMR][1000 genomes] |
rs11839771 | 0.81[ASN][1000 genomes] |
rs11843820 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11843823 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs17079605 | 0.90[ASN][1000 genomes] |
rs17079878 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17079885 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17080000 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17080006 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17080011 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17252270 | 0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs17837226 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs3843944 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3850030 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs4086584 | 0.82[ASN][1000 genomes] |
rs4126979 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4126981 | 0.82[ASN][1000 genomes] |
rs57147941 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs57248843 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs58389755 | 0.86[AMR][1000 genomes] |
rs58920081 | 0.91[AMR][1000 genomes] |
rs58982989 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs59435782 | 0.86[AMR][1000 genomes] |
rs60820979 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs7324085 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7325617 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7328824 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs73506863 | 0.89[ASN][1000 genomes] |
rs73506866 | 0.89[ASN][1000 genomes] |
rs73506872 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs8002178 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9564290 | 0.90[ASN][1000 genomes] |
rs9564291 | 0.89[ASN][1000 genomes] |
rs9571515 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1047991 | chr13:65982529-66931617 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv530416 | chr13:66198235-67126195 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1053763 | chr13:66210166-67184972 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
4 | nsv541811 | chr13:66210166-67184972 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
5 | nsv932195 | chr13:66215786-67215733 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
6 | nsv530723 | chr13:66219650-67200316 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
7 | nsv1052017 | chr13:66232288-67213033 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
8 | nsv534503 | chr13:66287963-67126195 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
9 | nsv900385 | chr13:66492872-66611146 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
10 | nsv562094 | chr13:66499490-66582000 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:66501800-66513400 | Weak transcription | Psoas Muscle | Psoas |
2 | chr13:66510200-66512400 | Enhancers | Brain Germinal Matrix | brain |
3 | chr13:66511600-66513200 | Weak transcription | Colon Smooth Muscle | Colon |