Variant report

Variant	rs9564291
Chromosome Location	chr13:66501198-66501199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:66500564..66501578-chr13:66540848..66541721,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492541	0.89[ASN][1000 genomes]
rs11839771	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17079605	0.99[ASN][1000 genomes]
rs17079768	0.89[ASN][1000 genomes]
rs17079878	0.89[ASN][1000 genomes]
rs17079885	0.89[ASN][1000 genomes]
rs17080000	0.89[ASN][1000 genomes]
rs17080006	0.89[ASN][1000 genomes]
rs17080011	0.85[ASN][1000 genomes]
rs3843944	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4086584	0.90[ASN][1000 genomes]
rs4126981	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs57248843	0.87[ASN][1000 genomes]
rs7324085	0.89[ASN][1000 genomes]
rs7325617	0.89[ASN][1000 genomes]
rs73506863	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73506866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564290	0.99[ASN][1000 genomes]
rs9571515	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455917	chr13:65931353-66508344	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv562090	chr13:65931353-66508344	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1047991	chr13:65982529-66931617	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv900385	chr13:66492872-66611146	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
12	nsv562094	chr13:66499490-66582000	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66497000-66501200	Weak transcription	Osteobl	bone
2	chr13:66500800-66501200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr13:66500800-66501200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:66500800-66501200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:66500800-66501200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:66500800-66501200	Enhancers	Liver	Liver
7	chr13:66500800-66501200	Enhancers	HMEC	breast
8	chr13:66500800-66501400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:66500800-66501400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:66500800-66501400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:66500800-66501400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr13:66500800-66501400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:66500800-66501400	Enhancers	Right Atrium	heart
14	chr13:66500800-66501600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr13:66500800-66501600	Enhancers	Fetal Lung	lung
16	chr13:66500800-66501600	Enhancers	Left Ventricle	heart
17	chr13:66500800-66501600	Enhancers	Pancreas	Pancrea
18	chr13:66501000-66501200	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr13:66501000-66501200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr13:66501000-66501200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr13:66501000-66501400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr13:66501000-66501400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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