Variant report

Variant	rs17090415
Chromosome Location	chr4:62098719-62098720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17090411	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4860081	1.00[YRI][hapmap]
rs57554118	1.00[AMR][1000 genomes]
rs60088708	1.00[AMR][1000 genomes]
rs6822080	1.00[AMR][1000 genomes]
rs6851337	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs874859	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879074	chr4:62000391-62109770	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62090600-62105000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62091400-62103000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:62091400-62103600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:62095200-62110800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:62095800-62098800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62097400-62099400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:62098400-62099200	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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