Variant report

Variant	rs60088708
Chromosome Location	chr4:62080461-62080462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17090411	1.00[AMR][1000 genomes]
rs17090415	1.00[AMR][1000 genomes]
rs57554118	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6822080	1.00[AMR][1000 genomes]
rs6851337	1.00[AMR][1000 genomes]
rs874859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879074	chr4:62000391-62109770	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62076200-62090400	Weak transcription	Aorta	Aorta
2	chr4:62076600-62090200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:62077600-62083000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:62077800-62084200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:62078000-62082800	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:62079400-62080600	Weak transcription	Brain Substantia Nigra	brain
7	chr4:62079400-62082800	Weak transcription	Brain Anterior Caudate	brain
8	chr4:62079400-62082800	Weak transcription	Fetal Heart	heart
9	chr4:62079600-62082600	Weak transcription	Brain Angular Gyrus	brain
10	chr4:62080400-62080600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:62080400-62080800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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