Variant report

Variant	rs874859
Chromosome Location	chr4:62068733-62068734
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17090409	0.90[AFR][1000 genomes]
rs17090411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090415	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554118	1.00[AMR][1000 genomes]
rs59564400	0.87[AFR][1000 genomes]
rs60088708	1.00[AMR][1000 genomes]
rs6822080	1.00[AMR][1000 genomes]
rs6851337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879074	chr4:62000391-62109770	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62065200-62069000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62065200-62069200	Active TSS	Fetal Kidney	kidney
3	chr4:62065400-62069000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr4:62065400-62070400	Active TSS	Brain Angular Gyrus	brain
5	chr4:62065400-62070400	Active TSS	Brain Anterior Caudate	brain
6	chr4:62065400-62071000	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr4:62065600-62069000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:62065600-62069200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:62065600-62069200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:62065600-62069400	Active TSS	Aorta	Aorta
11	chr4:62065600-62069400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
12	chr4:62065600-62070200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:62065600-62070800	Active TSS	Brain Substantia Nigra	brain
14	chr4:62065800-62069000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:62065800-62069000	Bivalent/Poised TSS	Colonic Mucosa	Colon
16	chr4:62065800-62069000	Bivalent/Poised TSS	Fetal Stomach	stomach
17	chr4:62065800-62069200	Bivalent/Poised TSS	Psoas Muscle	Psoas
18	chr4:62065800-62069400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:62065800-62069600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:62065800-62070200	Active TSS	Fetal Brain Male	brain
21	chr4:62066000-62068800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:62066400-62068800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
23	chr4:62066600-62068800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr4:62066600-62069200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr4:62066600-62069200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
26	chr4:62066600-62069200	Bivalent/Poised TSS	Left Ventricle	heart
27	chr4:62066800-62068800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr4:62066800-62069000	Active TSS	Fetal Heart	heart
29	chr4:62066800-62069200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr4:62067000-62069000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr4:62067000-62069000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:62067000-62069000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
33	chr4:62067000-62069000	Flanking Bivalent TSS/Enh	HMEC	breast
34	chr4:62067000-62069200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
35	chr4:62067000-62069200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:62067200-62069200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
37	chr4:62067200-62069200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
38	chr4:62067200-62069800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:62067400-62069200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
40	chr4:62067400-62069400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
41	chr4:62067600-62068800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:62067600-62068800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr4:62067800-62068800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
44	chr4:62067800-62069200	Active TSS	Right Atrium	heart
45	chr4:62067800-62069200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
46	chr4:62067800-62069400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
47	chr4:62067800-62071000	Active TSS	Brain Cingulate Gyrus	brain
48	chr4:62068000-62068800	Active TSS	NH-A	brain
49	chr4:62068000-62069000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:62068000-62069000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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