Variant report

Variant	rs6851337
Chromosome Location	chr4:62072592-62072593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17090409	0.90[AFR][1000 genomes]
rs17090411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090415	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554118	1.00[AMR][1000 genomes]
rs59564400	0.87[AFR][1000 genomes]
rs60088708	1.00[AMR][1000 genomes]
rs6822080	1.00[AMR][1000 genomes]
rs874859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879074	chr4:62000391-62109770	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62070400-62072600	Enhancers	Brain Anterior Caudate	brain
2	chr4:62070400-62077800	Weak transcription	Fetal Brain Male	brain
3	chr4:62071200-62073600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:62071200-62075600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:62071200-62075800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:62071200-62075800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:62071200-62076000	Weak transcription	Aorta	Aorta
8	chr4:62071600-62075200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:62071600-62075800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:62071600-62075800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:62071600-62075800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:62071600-62078600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:62071800-62075000	Weak transcription	Brain Angular Gyrus	brain
14	chr4:62071800-62075600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:62071800-62075800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:62072000-62075800	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:62072200-62074800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:62072200-62075800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:62072400-62074400	Weak transcription	Brain Substantia Nigra	brain
20	chr4:62072400-62074600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:62072400-62075800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:62072400-62076200	Weak transcription	Fetal Heart	heart

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