Variant report

Variant	rs6822080
Chromosome Location	chr4:62089044-62089045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17090411	1.00[AMR][1000 genomes]
rs17090415	1.00[AMR][1000 genomes]
rs57554118	1.00[AMR][1000 genomes]
rs60088708	1.00[AMR][1000 genomes]
rs6851337	1.00[AMR][1000 genomes]
rs73214513	0.91[AFR][1000 genomes]
rs874859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879074	chr4:62000391-62109770	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62076200-62090400	Weak transcription	Aorta	Aorta
2	chr4:62076600-62090200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:62081200-62096200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr4:62083000-62090200	Weak transcription	Brain Angular Gyrus	brain
5	chr4:62083400-62089400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:62086600-62089200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62086800-62098400	Weak transcription	Fetal Heart	heart
8	chr4:62088200-62089600	Enhancers	Brain Substantia Nigra	brain
9	chr4:62088800-62089400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr4:62088800-62089600	Enhancers	Brain Anterior Caudate	brain
11	chr4:62088800-62089800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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