Variant report
| Variant | rs17090830 |
|---|---|
| Chromosome Location | chr1:71565867-71565868 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71544366..71547051-chr1:71565593..71567757,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000132485 | Chromatin interaction |
| ENSG00000229956 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs17090787 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090792 | 1.00[AMR][1000 genomes] |
| rs17090795 | 1.00[AMR][1000 genomes] |
| rs17090797 | 1.00[AMR][1000 genomes] |
| rs17090798 | 1.00[AMR][1000 genomes] |
| rs17090856 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090866 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090870 | 0.84[AFR][1000 genomes] |
| rs17090875 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090879 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090886 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090894 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090897 | 1.00[AMR][1000 genomes] |
| rs17090975 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17091077 | 1.00[AMR][1000 genomes] |
| rs17097548 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17097555 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2901566 | 1.00[AMR][1000 genomes] |
| rs74090213 | 1.00[AMR][1000 genomes] |
| rs7523772 | 1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
