Variant report
| Variant | rs17090975 |
|---|---|
| Chromosome Location | chr1:71673926-71673927 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71672123..71674312-chr1:71679982..71682274,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CTH-6 | chr1:71673864-71673979 | ENSG00000229956.5 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs17090787 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090792 | 1.00[AMR][1000 genomes] |
| rs17090795 | 1.00[AMR][1000 genomes] |
| rs17090797 | 1.00[AMR][1000 genomes] |
| rs17090798 | 1.00[AMR][1000 genomes] |
| rs17090830 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090856 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090866 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090870 | 1.00[AFR][1000 genomes] |
| rs17090875 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090879 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090886 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090894 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17090897 | 1.00[AMR][1000 genomes] |
| rs17091077 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17091167 | 1.00[AMR][1000 genomes] |
| rs17091192 | 1.00[AMR][1000 genomes] |
| rs17097548 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17097555 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2901566 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74090213 | 1.00[AMR][1000 genomes] |
| rs7523772 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949599 | chr1:71655652-72327802 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
