Variant report

Variant	rs17090886
Chromosome Location	chr1:71631676-71631677
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17090787	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090792	1.00[AMR][1000 genomes]
rs17090795	1.00[AMR][1000 genomes]
rs17090797	1.00[AMR][1000 genomes]
rs17090798	1.00[AMR][1000 genomes]
rs17090830	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090870	1.00[AFR][1000 genomes]
rs17090875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090897	1.00[AMR][1000 genomes]
rs17090975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17091077	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090213	1.00[AMR][1000 genomes]
rs7523772	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521769	chr1:71578442-71633719	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3362305	chr1:71594980-71631787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv818211	chr1:71603703-71633719	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71625400-71637800	Weak transcription	Pancreas	Pancrea
2	chr1:71631000-71632200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:71631600-71632800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:71631600-71633400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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