Variant report

Variant	rs17091077
Chromosome Location	chr1:71765897-71765898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17090787	1.00[AMR][1000 genomes]
rs17090792	1.00[AMR][1000 genomes]
rs17090795	1.00[AMR][1000 genomes]
rs17090797	1.00[AMR][1000 genomes]
rs17090798	1.00[AMR][1000 genomes]
rs17090830	1.00[AMR][1000 genomes]
rs17090856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090866	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090870	0.92[AFR][1000 genomes]
rs17090875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090879	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090897	1.00[AMR][1000 genomes]
rs17090975	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17091167	1.00[AMR][1000 genomes]
rs17091192	1.00[AMR][1000 genomes]
rs17097555	1.00[AMR][1000 genomes]
rs2901566	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1005726	chr1:71701840-71953242	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1848377	chr1:71718838-71964514	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv531880	chr1:71724941-71964501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71764800-71769200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:71765000-71769200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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