Variant report

Variant	rs17094727
Chromosome Location	chr10:118189100-118189101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12265880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17094705	1.00[ASN][1000 genomes]
rs17094718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1835666	1.00[CEU][hapmap]
rs61284121	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7094204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73377427	1.00[ASN][1000 genomes]
rs73377448	1.00[ASN][1000 genomes]
rs73381528	0.99[ASN][1000 genomes]
rs73381531	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118187200-118189200	Active TSS	HMEC	breast
2	chr10:118187200-118189200	Active TSS	NHEK	skin
3	chr10:118187200-118189400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:118187200-118190200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:118187200-118190800	Enhancers	Liver	Liver
6	chr10:118188800-118189600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:118188800-118189800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:118189000-118189200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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