Variant report

Variant	rs73381528
Chromosome Location	chr10:118195905-118195906
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1118786	1.00[AMR][1000 genomes]
rs12265880	0.99[ASN][1000 genomes]
rs17094705	0.99[ASN][1000 genomes]
rs17094718	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17094727	0.99[ASN][1000 genomes]
rs4492731	1.00[AMR][1000 genomes]
rs61284121	0.99[ASN][1000 genomes]
rs7094204	0.99[ASN][1000 genomes]
rs73377427	0.99[ASN][1000 genomes]
rs73377448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73381531	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118190800-118197800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:118191600-118216200	Weak transcription	Pancreas	Pancrea
3	chr10:118193000-118197200	Genic enhancers	NHEK	skin
4	chr10:118193600-118196000	Enhancers	HMEC	breast
5	chr10:118195200-118196600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:118195600-118196800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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