Variant report

Variant	rs73381531
Chromosome Location	chr10:118197961-118197962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1118786	1.00[AMR][1000 genomes]
rs12265880	0.98[ASN][1000 genomes]
rs17094705	0.98[ASN][1000 genomes]
rs17094718	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17094727	0.98[ASN][1000 genomes]
rs4492731	1.00[AMR][1000 genomes]
rs61284121	0.98[ASN][1000 genomes]
rs7094204	0.98[ASN][1000 genomes]
rs73377427	0.98[ASN][1000 genomes]
rs73377448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73381528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118191600-118216200	Weak transcription	Pancreas	Pancrea
2	chr10:118196000-118198000	Genic enhancers	HMEC	breast
3	chr10:118196800-118198000	Enhancers	Primary T cells from cord blood	blood
4	chr10:118196800-118198000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:118197000-118199200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:118197000-118199600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:118197200-118199400	Strong transcription	NHEK	skin
8	chr10:118197800-118199200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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