Variant report

Variant	rs17096416
Chromosome Location	chr11:101147938-101147939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11571138	0.89[YRI][hapmap]
rs12287203	1.00[AMR][1000 genomes]
rs17096381	1.00[AMR][1000 genomes]
rs17096432	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57066252	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57575538	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59237411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60159104	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61341674	0.80[AFR][1000 genomes]
rs7112977	0.89[YRI][hapmap]
rs7115776	1.00[AMR][1000 genomes]
rs7128170	1.00[AMR][1000 genomes]
rs7128626	0.89[YRI][hapmap]
rs7928290	0.89[YRI][hapmap]
rs7934807	0.80[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832247	chr11:101123483-101298787	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101126400-101169400	Weak transcription	Ovary	ovary
2	chr11:101141000-101157400	Weak transcription	Aorta	Aorta
3	chr11:101147800-101148200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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