Variant report

Variant	rs17098833
Chromosome Location	chr14:32815477-32815478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131297	0.82[JPT][hapmap]
rs10134897	0.85[ASN][1000 genomes]
rs10137472	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10151990	0.82[JPT][hapmap]
rs10483399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs11623151	0.95[ASN][1000 genomes]
rs17098767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17098781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs17098838	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2208868	0.91[ASN][1000 genomes]
rs3784172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs3825744	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs61981849	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61981850	0.93[EUR][1000 genomes]
rs7151141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666119	0.95[ASN][1000 genomes]
rs7492831	0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs8021139	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322897	0.82[JPT][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
3	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
4	chr14:32809800-32815600	Enhancers	NHEK	skin
5	chr14:32810000-32815600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:32814000-32827800	Weak transcription	Brain Germinal Matrix	brain
7	chr14:32814200-32815600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:32814600-32815600	Enhancers	Fetal Heart	heart
9	chr14:32814800-32824000	Weak transcription	Aorta	Aorta
10	chr14:32815000-32816600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:32815000-32818000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:32815000-32819000	Weak transcription	GM12878-XiMat	blood
13	chr14:32815000-32823600	Weak transcription	Brain Anterior Caudate	brain
14	chr14:32815000-32827000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:32815200-32818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:32815200-32818000	Weak transcription	HMEC	breast
17	chr14:32815200-32818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:32815200-32823600	Weak transcription	Brain Angular Gyrus	brain
19	chr14:32815400-32816800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:32815400-32817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:32815400-32821800	Weak transcription	Brain Substantia Nigra	brain
22	chr14:32815400-32825600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links