Variant report

Variant	rs10483399
Chromosome Location	chr14:32807504-32807505
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32802733..32804895-chr14:32807026..32809604,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131096	1.00[ASN][1000 genomes]
rs10137472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11156740	1.00[MEX][hapmap]
rs11623151	0.81[ASN][1000 genomes]
rs17098767	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17098781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17098833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs17098838	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17098884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes]
rs2208868	0.84[EUR][1000 genomes]
rs3784172	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3825744	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs61981849	0.89[EUR][1000 genomes]
rs61981850	0.88[EUR][1000 genomes]
rs7151141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes]
rs72666116	0.84[EUR][1000 genomes]
rs72666119	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72666125	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666126	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7492831	0.82[JPT][hapmap]
rs8021139	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10483399	TGFBR3	trans	lymphoblastoid	seeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
3	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
4	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
5	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
8	chr14:32802800-32810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:32803200-32809200	Enhancers	Brain Substantia Nigra	brain
10	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
12	chr14:32805600-32808600	Weak transcription	Brain Angular Gyrus	brain
13	chr14:32805600-32808600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:32805800-32810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:32806000-32810200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:32806200-32811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:32806200-32811800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:32806400-32808600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:32806400-32808800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:32806400-32811200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:32806400-32811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr14:32806400-32811400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:32806400-32811600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:32806400-32811800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:32806600-32808600	Weak transcription	Brain Germinal Matrix	brain
26	chr14:32807200-32810800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:32807200-32814600	Weak transcription	Aorta	Aorta

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