Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32817648..32820020-chr14:32823039..32825542,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131297	1.00[JPT][hapmap]
rs10134897	0.96[ASN][1000 genomes]
rs10135655	0.82[JPT][hapmap]
rs10137472	1.00[CHB][hapmap]
rs10151990	1.00[JPT][hapmap]
rs10483399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes]
rs11156740	1.00[MEX][hapmap]
rs11623151	0.81[ASN][1000 genomes]
rs17098767	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17098781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17098833	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17098838	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs3784172	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs3825744	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs61981849	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981850	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7151141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72666119	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72666154	0.83[AMR][1000 genomes]
rs7492831	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8021139	0.89[EUR][1000 genomes]
rs9322897	1.00[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17098884	APP	trans	lymphoblastoid	seeQTL
rs17098884	TGFBR3	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32814000-32827800	Weak transcription	Brain Germinal Matrix	brain
3	chr14:32815000-32827000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:32815400-32825600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
7	chr14:32823600-32828400	Enhancers	Brain Substantia Nigra	brain
8	chr14:32824200-32824600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr14:32824200-32825600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:32824200-32826600	Weak transcription	Brain Angular Gyrus	brain
11	chr14:32824400-32826000	Weak transcription	Brain Anterior Caudate	brain
12	chr14:32824400-32826000	Weak transcription	Brain Hippocampus Middle	brain

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