Variant report

Variant	rs3825744
Chromosome Location	chr14:32801590-32801591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10131096	1.00[ASN][1000 genomes]
rs10137472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10483399	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs11623151	0.81[ASN][1000 genomes]
rs17098767	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17098781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17098833	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17098838	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17098884	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs2208868	0.95[EUR][1000 genomes]
rs3784172	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7151141	1.00[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap]
rs72666116	0.95[EUR][1000 genomes]
rs72666119	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72666125	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666126	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72666154	0.82[EUR][1000 genomes]
rs7492831	1.00[CEU][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32796600-32802400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
4	chr14:32797600-32801600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:32797800-32803400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:32798200-32801600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:32798200-32801800	Active TSS	Brain Hippocampus Middle	brain
8	chr14:32798200-32801800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:32799400-32801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
11	chr14:32799600-32802800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:32799800-32801800	Enhancers	NHEK	skin
13	chr14:32799800-32802800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:32800000-32803200	Enhancers	Fetal Intestine Small	intestine
15	chr14:32800000-32803400	Enhancers	Fetal Intestine Large	intestine
16	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
17	chr14:32800400-32801800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:32800400-32806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:32800600-32805200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:32800800-32801800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:32800800-32802600	Enhancers	K562	blood
22	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr14:32801000-32802000	Flanking Active TSS	Fetal Brain Female	brain
24	chr14:32801000-32802400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr14:32801000-32806000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:32801200-32801800	Flanking Active TSS	Brain Anterior Caudate	brain
28	chr14:32801200-32801800	Flanking Active TSS	Brain Substantia Nigra	brain
29	chr14:32801200-32802400	Flanking Active TSS	Brain Angular Gyrus	brain
30	chr14:32801400-32802000	Flanking Active TSS	Brain Germinal Matrix	brain
31	chr14:32801400-32802000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr14:32801400-32802000	Flanking Active TSS	Fetal Brain Male	brain
33	chr14:32801400-32802200	Flanking Active TSS	Brain Cingulate Gyrus	brain
34	chr14:32801400-32802400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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