Variant report

Variant	rs17105285
Chromosome Location	chr14:68729881-68729882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68718502..68724365-chr14:68724697..68730654,11	MCF-7	breast:
2	chr14:68726719..68728326-chr14:68728463..68730963,2	MCF-7	breast:
3	chr14:68727081..68730048-chr14:68748759..68751215,2	MCF-7	breast:
4	chr14:68729728..68732585-chr14:69261709..69264377,2	MCF-7	breast:
5	chr14:68728077..68730051-chr14:68734736..68736706,2	MCF-7	breast:
6	chr14:68721361..68723565-chr14:68729785..68732036,2	MCF-7	breast:
7	chr14:68722518..68726023-chr14:68727697..68732553,5	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17105103	0.93[AFR][1000 genomes]
rs17105117	0.93[AFR][1000 genomes]
rs17105236	0.93[AFR][1000 genomes]
rs17105277	1.00[AFR][1000 genomes]
rs1958110	0.93[AFR][1000 genomes]
rs35590923	0.93[AFR][1000 genomes]
rs60505104	0.93[AFR][1000 genomes]
rs73288067	0.93[AFR][1000 genomes]
rs73288081	0.93[AFR][1000 genomes]
rs73288084	0.93[AFR][1000 genomes]
rs73288097	0.93[AFR][1000 genomes]
rs73290210	0.93[AFR][1000 genomes]
rs73290216	0.93[AFR][1000 genomes]
rs73290218	0.93[AFR][1000 genomes]
rs73290248	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68718800-68730600	Weak transcription	Fetal Intestine Large	intestine
2	chr14:68718800-68730600	Weak transcription	Small Intestine	intestine
3	chr14:68722400-68739800	Weak transcription	Gastric	stomach
4	chr14:68723400-68730400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:68723400-68736000	Weak transcription	Aorta	Aorta
6	chr14:68723600-68730400	Weak transcription	Fetal Kidney	kidney
7	chr14:68724800-68730000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr14:68725000-68731200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:68725400-68730200	Enhancers	Fetal Thymus	thymus
10	chr14:68725400-68731000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:68725400-68731000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr14:68725400-68731200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:68725400-68731200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:68725400-68731400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:68725400-68731600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr14:68725400-68731800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:68726000-68734600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:68726200-68730000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:68726400-68731800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:68726600-68730000	Enhancers	Primary B cells from peripheral blood	blood
21	chr14:68726600-68730600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr14:68726600-68730600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:68726800-68731000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:68726800-68731000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:68727200-68730000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:68727400-68732200	Enhancers	Fetal Lung	lung
27	chr14:68728200-68730000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:68728200-68730000	Weak transcription	Adipose Nuclei	Adipose
29	chr14:68728200-68731600	Enhancers	Primary T cells from cord blood	blood
30	chr14:68728200-68731800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr14:68728400-68731200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr14:68728400-68733000	Enhancers	GM12878-XiMat	blood
33	chr14:68728600-68730000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr14:68728600-68730800	Weak transcription	Colon Smooth Muscle	Colon
35	chr14:68728600-68731600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr14:68728600-68731800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr14:68728600-68731800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr14:68728800-68730000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
39	chr14:68728800-68730000	Enhancers	K562	blood
40	chr14:68728800-68730200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:68728800-68730800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:68728800-68732000	Weak transcription	Primary B cells from cord blood	blood
43	chr14:68729000-68730600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr14:68729000-68730800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr14:68729000-68734400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr14:68729200-68730200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr14:68729200-68730400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:68729200-68730400	Weak transcription	Fetal Intestine Small	intestine
49	chr14:68729200-68732800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr14:68729200-68733600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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