Variant report

Variant	rs60505104
Chromosome Location	chr14:68725088-68725089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68722518..68726023-chr14:68727697..68732553,5	K562	blood:
2	chr14:68718502..68724365-chr14:68724697..68730654,11	MCF-7	breast:
3	chr14:68721992..68725773-chr14:68931800..68936275,3	MCF-7	breast:
4	chr14:68708487..68726231-chr14:69250578..69263645,103	MCF-7	breast:
5	chr14:68718999..68725813-chr14:68770906..68776082,15	MCF-7	breast:
6	chr14:68722990..68725291-chr14:68734778..68737297,2	MCF-7	breast:
7	chr14:68406185..68411686-chr14:68720403..68727836,10	MCF-7	breast:
8	chr14:68721191..68725230-chr14:68727220..68729721,4	MCF-7	breast:
9	chr14:68723841..68726668-chr14:68738353..68741257,2	MCF-7	breast:
10	chr14:68605465..68608854-chr14:68724307..68725901,3	MCF-7	breast:
11	chr14:68604670..68608287-chr14:68720771..68726254,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17105103	1.00[AFR][1000 genomes]
rs17105117	1.00[AFR][1000 genomes]
rs17105236	1.00[AFR][1000 genomes]
rs17105277	0.93[AFR][1000 genomes]
rs17105285	0.93[AFR][1000 genomes]
rs1958110	1.00[AFR][1000 genomes]
rs35590923	1.00[AFR][1000 genomes]
rs73288067	1.00[AFR][1000 genomes]
rs73288081	1.00[AFR][1000 genomes]
rs73288084	1.00[AFR][1000 genomes]
rs73288097	1.00[AFR][1000 genomes]
rs73290210	1.00[AFR][1000 genomes]
rs73290216	1.00[AFR][1000 genomes]
rs73290218	1.00[AFR][1000 genomes]
rs73290248	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68715200-68727200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr14:68717800-68725600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:68718600-68727000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:68718600-68727600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:68718600-68727800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:68718800-68725400	Weak transcription	Fetal Thymus	thymus
7	chr14:68718800-68730600	Weak transcription	Fetal Intestine Large	intestine
8	chr14:68718800-68730600	Weak transcription	Small Intestine	intestine
9	chr14:68719000-68727400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:68721400-68726400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:68721400-68727000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:68721600-68725400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:68722200-68727000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:68722200-68727200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:68722400-68739800	Weak transcription	Gastric	stomach
16	chr14:68722800-68725400	Weak transcription	GM12878-XiMat	blood
17	chr14:68722800-68727200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:68722800-68727600	Weak transcription	Primary B cells from cord blood	blood
19	chr14:68723000-68725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:68723000-68726400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:68723000-68726600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:68723000-68727800	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:68723200-68725400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:68723200-68725600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:68723200-68728400	Weak transcription	Ovary	ovary
26	chr14:68723400-68725200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:68723400-68725200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:68723400-68725400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:68723400-68725400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr14:68723400-68725400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:68723400-68725400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:68723400-68725400	Weak transcription	Thymus	Thymus
33	chr14:68723400-68725600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr14:68723400-68725600	Weak transcription	Fetal Stomach	stomach
35	chr14:68723400-68726400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:68723400-68726800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:68723400-68730400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:68723400-68736000	Weak transcription	Aorta	Aorta
39	chr14:68723600-68725400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:68723600-68725400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:68723600-68726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:68723600-68726800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr14:68723600-68727600	Weak transcription	HUVEC	blood vessel
44	chr14:68723600-68730400	Weak transcription	Fetal Kidney	kidney
45	chr14:68723800-68725600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:68723800-68727200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:68724000-68725200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr14:68724000-68726600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr14:68724000-68727400	Weak transcription	Fetal Lung	lung
50	chr14:68724800-68727800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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