Variant report

Variant	rs1958110
Chromosome Location	chr14:68716664-68716665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68710270..68718985-chr14:68771545..68777065,19	MCF-7	breast:
2	chr14:68715136..68717167-chr14:68924205..68927016,2	MCF-7	breast:
3	chr14:68655074..68665772-chr14:68705598..68717948,30	MCF-7	breast:
4	chr14:68711443..68714293-chr14:68715594..68717440,2	MCF-7	breast:
5	chr14:68716325..68719103-chr14:68757433..68761699,4	MCF-7	breast:
6	chr14:68708247..68712239-chr14:68715393..68718268,4	MCF-7	breast:
7	chr14:68715587..68718504-chr14:69240857..69243611,2	MCF-7	breast:
8	chr14:68714804..68718493-chr14:68766094..68768941,3	MCF-7	breast:
9	chr14:68715259..68719440-chr14:68772805..68775724,5	MCF-7	breast:
10	chr14:68715317..68717585-chr14:68825893..68828768,2	MCF-7	breast:
11	chr14:68712832..68721681-chr14:69280637..69286048,12	MCF-7	breast:
12	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
13	chr14:68714818..68717761-chr14:68719497..68721496,2	MCF-7	breast:
14	chr14:68714912..68718303-chr14:68931649..68935294,4	MCF-7	breast:
15	chr14:68716541..68718661-chr14:69283257..69284761,2	MCF-7	breast:
16	chr14:68604504..68610375-chr14:68709920..68717829,10	MCF-7	breast:
17	chr14:68708487..68726231-chr14:69250578..69263645,103	MCF-7	breast:
18	chr14:68715271..68717103-chr14:68828305..68830296,2	MCF-7	breast:
19	chr14:68715321..68716856-chr14:68989735..68992199,2	MCF-7	breast:
20	chr14:68711091..68724838-chr14:69248065..69264571,70	MCF-7	breast:
21	chr14:68713812..68718253-chr14:68930214..68933178,5	MCF-7	breast:
22	chr14:68716374..68719235-chr14:69124469..69126637,2	MCF-7	breast:
23	chr14:68715942..68718392-chr14:68782258..68784729,2	MCF-7	breast:
24	chr14:68604794..68607877-chr14:68715482..68717811,3	MCF-7	breast:
25	chr14:68696499..68699543-chr14:68714462..68717236,3	MCF-7	breast:
26	chr14:68691853..68693824-chr14:68716632..68719476,2	MCF-7	breast:
27	chr14:68715572..68717664-chr14:69031801..69033626,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17105103	1.00[AFR][1000 genomes]
rs17105117	1.00[AFR][1000 genomes]
rs17105236	1.00[AFR][1000 genomes]
rs17105277	0.93[AFR][1000 genomes]
rs17105285	0.93[AFR][1000 genomes]
rs35590923	1.00[AFR][1000 genomes]
rs60505104	1.00[AFR][1000 genomes]
rs73288067	1.00[AFR][1000 genomes]
rs73288081	1.00[AFR][1000 genomes]
rs73288084	1.00[AFR][1000 genomes]
rs73288097	1.00[AFR][1000 genomes]
rs73290210	1.00[AFR][1000 genomes]
rs73290216	1.00[AFR][1000 genomes]
rs73290218	1.00[AFR][1000 genomes]
rs73290248	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68703000-68718800	Enhancers	Fetal Intestine Large	intestine
2	chr14:68703200-68718800	Enhancers	Fetal Intestine Small	intestine
3	chr14:68707200-68724000	Enhancers	Fetal Lung	lung
4	chr14:68707600-68720400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:68707800-68717800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr14:68707800-68718000	Enhancers	Stomach Mucosa	stomach
7	chr14:68709600-68717800	Enhancers	Adipose Nuclei	Adipose
8	chr14:68710000-68718800	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:68710200-68718600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:68710200-68718800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:68710200-68719000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:68710200-68719400	Enhancers	Fetal Heart	heart
13	chr14:68710400-68718600	Enhancers	Brain Hippocampus Middle	brain
14	chr14:68710400-68718600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr14:68710400-68718800	Enhancers	Fetal Stomach	stomach
16	chr14:68710800-68717800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:68710800-68718600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:68710800-68719000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:68711200-68718600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:68711400-68719200	Enhancers	Colon Smooth Muscle	Colon
21	chr14:68712000-68717800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:68712200-68717800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:68712200-68718000	Enhancers	Brain Anterior Caudate	brain
24	chr14:68712200-68718000	Enhancers	HUVEC	blood vessel
25	chr14:68712200-68718000	Enhancers	Osteobl	bone
26	chr14:68712200-68723600	Enhancers	Fetal Kidney	kidney
27	chr14:68712400-68717600	Enhancers	Liver	Liver
28	chr14:68712400-68718400	Enhancers	HepG2	liver
29	chr14:68712400-68718800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr14:68712400-68719400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr14:68712600-68717800	Enhancers	HSMM	muscle
32	chr14:68712800-68718000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:68712800-68718400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:68712800-68718400	Enhancers	Hela-S3	cervix
35	chr14:68712800-68723600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr14:68713000-68718200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:68713000-68718400	Enhancers	NHEK	skin
38	chr14:68713000-68718800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr14:68713400-68719200	Enhancers	GM12878-XiMat	blood
40	chr14:68713600-68719600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr14:68713800-68719400	Enhancers	Primary T cells from cord blood	blood
42	chr14:68714200-68719000	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr14:68714400-68717800	Flanking Active TSS	A549	lung
44	chr14:68714400-68718200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:68714400-68718400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:68714400-68718600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr14:68714400-68718600	Enhancers	Fetal Muscle Leg	muscle
48	chr14:68714400-68718800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr14:68714400-68718800	Enhancers	Fetal Thymus	thymus
50	chr14:68714400-68718800	Enhancers	NHLF	lung

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