Variant report

Variant	rs73290210
Chromosome Location	chr14:68667859-68667860
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17105103	1.00[AFR][1000 genomes]
rs17105117	1.00[AFR][1000 genomes]
rs17105236	1.00[AFR][1000 genomes]
rs17105277	0.93[AFR][1000 genomes]
rs17105285	0.93[AFR][1000 genomes]
rs1958110	1.00[AFR][1000 genomes]
rs35590923	1.00[AFR][1000 genomes]
rs60505104	1.00[AFR][1000 genomes]
rs73288067	1.00[AFR][1000 genomes]
rs73288081	1.00[AFR][1000 genomes]
rs73288084	1.00[AFR][1000 genomes]
rs73288097	1.00[AFR][1000 genomes]
rs73290216	1.00[AFR][1000 genomes]
rs73290218	1.00[AFR][1000 genomes]
rs73290248	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
2	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68651200-68675000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68666600-68672800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr14:68666600-68675000	Weak transcription	Ovary	ovary
6	chr14:68666600-68675200	Weak transcription	Thymus	Thymus
7	chr14:68666800-68670200	Weak transcription	Aorta	Aorta
8	chr14:68666800-68675000	Weak transcription	Primary T cells from cord blood	blood
9	chr14:68667000-68669000	Weak transcription	A549	lung
10	chr14:68667000-68670200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:68667000-68670400	Weak transcription	Adipose Nuclei	Adipose
12	chr14:68667000-68674600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:68667000-68675600	Weak transcription	Stomach Mucosa	stomach
14	chr14:68667200-68668200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:68667200-68670600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:68667200-68670800	Weak transcription	HUVEC	blood vessel
17	chr14:68667400-68672800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:68667600-68668000	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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