Variant report

Variant	rs73288084
Chromosome Location	chr14:68655293-68655294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68653597..68656597-chr6:150487153..150490564,3	K562	blood:
2	chr14:68410294..68412470-chr14:68653966..68656061,2	MCF-7	breast:
3	chr14:68407418..68410166-chr14:68654124..68655771,2	MCF-7	breast:
4	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
5	chr14:68655077..68656597-chr6:150487690..150490646,2	K562	blood:
6	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
7	chr14:68655074..68665772-chr14:68705598..68717948,30	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17105103	1.00[AFR][1000 genomes]
rs17105117	1.00[AFR][1000 genomes]
rs17105236	1.00[AFR][1000 genomes]
rs17105277	0.93[AFR][1000 genomes]
rs17105285	0.93[AFR][1000 genomes]
rs1958110	1.00[AFR][1000 genomes]
rs35590923	1.00[AFR][1000 genomes]
rs60505104	1.00[AFR][1000 genomes]
rs73288067	1.00[AFR][1000 genomes]
rs73288081	1.00[AFR][1000 genomes]
rs73288097	1.00[AFR][1000 genomes]
rs73290210	1.00[AFR][1000 genomes]
rs73290216	1.00[AFR][1000 genomes]
rs73290218	1.00[AFR][1000 genomes]
rs73290248	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68641400-68658000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
3	chr14:68645000-68655600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
5	chr14:68648600-68659600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:68649000-68659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:68649400-68658000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:68649600-68657200	Weak transcription	Fetal Lung	lung
10	chr14:68649800-68660400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:68650000-68660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:68651200-68675000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:68652800-68655400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:68653000-68658200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:68653600-68658200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:68654000-68658200	Weak transcription	HSMMtube	muscle
17	chr14:68654200-68655800	Enhancers	A549	lung
18	chr14:68654600-68655400	Weak transcription	Stomach Mucosa	stomach
19	chr14:68654800-68655400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr14:68655000-68655800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:68655200-68655600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr14:68655200-68655600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr14:68655200-68655600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:68655200-68655800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr14:68655200-68656400	Weak transcription	Fetal Intestine Large	intestine

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