Variant report

Variant	rs17106902
Chromosome Location	chr5:146954504-146954505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1347137	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs1347139	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs1347140	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs1432831	0.89[EUR][1000 genomes]
rs17106906	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107055	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs17107069	0.94[EUR][1000 genomes]
rs17107091	0.89[EUR][1000 genomes]
rs17107108	0.89[EUR][1000 genomes]
rs17107113	0.89[EUR][1000 genomes]
rs2116764	0.94[EUR][1000 genomes]
rs2116766	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs35456547	0.94[EUR][1000 genomes]
rs58108907	0.94[EUR][1000 genomes]
rs6859329	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs73268170	0.84[EUR][1000 genomes]
rs7703612	0.89[EUR][1000 genomes]
rs7703708	0.94[EUR][1000 genomes]
rs7737054	0.89[EUR][1000 genomes]
rs9918176	0.94[EUR][1000 genomes]
rs999953	0.83[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146945600-146957400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:146946800-146956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:146950800-146954800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:146950800-146955000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:146950800-146956200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:146951000-146955000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:146951000-146955200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:146951600-146954800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:146951600-146955000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:146951800-146955000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:146952200-146955000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:146952400-146954600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr5:146952400-146954600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:146952400-146954800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:146953400-146954800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:146953600-146954600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:146954200-146954600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:146954200-146954600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:146954200-146954800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:146954400-146954600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:146954400-146956200	Weak transcription	Ovary	ovary

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