Variant report

Variant	rs2116764
Chromosome Location	chr5:147024608-147024609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr5:147024563-147024641	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
JAKMIP2	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1347137	0.89[EUR][1000 genomes]
rs1347139	0.89[EUR][1000 genomes]
rs1347140	0.89[EUR][1000 genomes]
rs1432831	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17106902	0.94[EUR][1000 genomes]
rs17106906	0.94[EUR][1000 genomes]
rs17107055	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107069	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107091	0.94[EUR][1000 genomes]
rs17107108	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107113	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2116766	0.94[EUR][1000 genomes]
rs35456547	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58108907	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6859329	0.89[EUR][1000 genomes]
rs73268170	0.89[EUR][1000 genomes]
rs7703612	0.94[EUR][1000 genomes]
rs7703708	1.00[EUR][1000 genomes]
rs7737054	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9918176	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146999400-147025400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:147006800-147025200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:147009400-147027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:147009400-147033200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:147010800-147028600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:147013000-147027400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:147013000-147030200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:147013000-147038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:147013600-147025800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr5:147014000-147029800	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:147014000-147030400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:147014200-147030400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:147015000-147030000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:147015200-147029000	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr5:147015400-147025600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:147015400-147050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
20	chr5:147016600-147037400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:147016600-147037800	Weak transcription	Fetal Stomach	stomach
22	chr5:147016600-147038200	Weak transcription	Brain Angular Gyrus	brain
23	chr5:147016600-147047400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr5:147017800-147026000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:147018200-147025400	Strong transcription	Fetal Thymus	thymus
26	chr5:147018200-147025600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:147018600-147025000	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:147018800-147025400	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr5:147020000-147037000	Weak transcription	Fetal Brain Male	brain
30	chr5:147021000-147025400	Strong transcription	Primary T cells from cord blood	blood
31	chr5:147021400-147037200	Weak transcription	Fetal Brain Female	brain
32	chr5:147021400-147042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr5:147022000-147025200	Strong transcription	Brain Hippocampus Middle	brain
34	chr5:147022400-147024800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr5:147022400-147025400	Strong transcription	Brain Substantia Nigra	brain
36	chr5:147022800-147025400	Strong transcription	Stomach Smooth Muscle	stomach
37	chr5:147022800-147037600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:147023200-147037600	Weak transcription	Thymus	Thymus
39	chr5:147023200-147037800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr5:147023400-147036800	Weak transcription	Brain Germinal Matrix	brain
41	chr5:147023800-147029000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:147023800-147037400	Weak transcription	Fetal Lung	lung
43	chr5:147024200-147028200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr5:147024200-147038400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr5:147024400-147025000	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr5:147024400-147025000	Active TSS	Ovary	ovary
47	chr5:147024400-147025400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr5:147024600-147024800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:147024600-147024800	Flanking Active TSS	HepG2	liver
50	chr5:147024600-147024800	Bivalent/Poised TSS	Osteobl	bone

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