Variant report

Variant	rs7737054
Chromosome Location	chr5:147050646-147050647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1347137	1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs1347139	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1347140	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1432831	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106902	0.89[EUR][1000 genomes]
rs17106906	0.89[EUR][1000 genomes]
rs17107055	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107069	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107091	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17107108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116764	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2116766	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs35456547	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58108907	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6859329	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs73268170	0.84[EUR][1000 genomes]
rs7703612	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7703708	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9918176	0.94[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:147025200-147053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:147035800-147052800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:147038800-147052200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:147038800-147053200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:147039200-147051200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:147039200-147052000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:147039600-147061800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:147041000-147052800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:147041000-147053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:147042400-147051000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:147046000-147052000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:147046600-147051600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:147046800-147051600	Strong transcription	Primary T cells from cord blood	blood
17	chr5:147047000-147052800	Weak transcription	Stomach Mucosa	stomach
18	chr5:147047400-147051400	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr5:147047400-147051400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:147047600-147051600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:147047800-147051400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:147048000-147052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:147048200-147051800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:147049000-147051600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:147049000-147051600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr5:147049000-147051800	Strong transcription	Primary hematopoietic stem cells	blood
27	chr5:147049000-147052000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:147049200-147051600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:147049200-147053000	Weak transcription	Left Ventricle	heart
30	chr5:147049400-147050800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:147049400-147051800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:147049400-147053000	Weak transcription	Gastric	stomach
33	chr5:147049400-147054000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:147049600-147052600	Weak transcription	Fetal Heart	heart
35	chr5:147049800-147051200	Weak transcription	Fetal Lung	lung
36	chr5:147050000-147051000	Weak transcription	Aorta	Aorta
37	chr5:147050000-147051600	Strong transcription	Fetal Brain Female	brain
38	chr5:147050000-147051800	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:147050200-147051600	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr5:147050400-147051200	Strong transcription	Fetal Brain Male	brain
41	chr5:147050400-147051400	Strong transcription	Brain Angular Gyrus	brain
42	chr5:147050400-147051400	Strong transcription	Brain Anterior Caudate	brain
43	chr5:147050400-147051400	Strong transcription	Brain Hippocampus Middle	brain
44	chr5:147050400-147051600	Strong transcription	Brain Germinal Matrix	brain
45	chr5:147050400-147051600	Strong transcription	Fetal Thymus	thymus
46	chr5:147050400-147051600	Strong transcription	Thymus	Thymus
47	chr5:147050600-147051000	Flanking Active TSS	Liver	Liver
48	chr5:147050600-147051000	Enhancers	Fetal Intestine Small	intestine
49	chr5:147050600-147051400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr5:147050600-147051400	Strong transcription	Brain Cingulate Gyrus	brain

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