Variant report

Variant	rs35456547
Chromosome Location	chr5:147040111-147040112
allele	-/ACAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1347137	0.89[EUR][1000 genomes]
rs1347139	0.89[EUR][1000 genomes]
rs1347140	0.89[EUR][1000 genomes]
rs1432831	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17106902	0.94[EUR][1000 genomes]
rs17106906	0.94[EUR][1000 genomes]
rs17107055	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107069	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107091	0.94[EUR][1000 genomes]
rs17107108	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107113	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2116764	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116766	0.94[EUR][1000 genomes]
rs58108907	1.00[EUR][1000 genomes]
rs6859329	0.89[EUR][1000 genomes]
rs73268170	0.89[EUR][1000 genomes]
rs7703612	0.94[EUR][1000 genomes]
rs7703708	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7737054	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9918176	1.00[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:147015400-147050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:147016600-147047400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:147021400-147042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:147025200-147041200	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:147025200-147053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:147025400-147040400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:147035800-147052800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:147036400-147042000	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:147037200-147041400	Strong transcription	Fetal Brain Female	brain
12	chr5:147037200-147046600	Weak transcription	Fetal Intestine Small	intestine
13	chr5:147037400-147040600	Strong transcription	Fetal Thymus	thymus
14	chr5:147037400-147040800	Strong transcription	Brain Inferior Temporal Lobe	brain
15	chr5:147037800-147040400	Weak transcription	Fetal Brain Male	brain
16	chr5:147037800-147041000	Strong transcription	Brain Anterior Caudate	brain
17	chr5:147037800-147041200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:147038000-147041200	Strong transcription	Brain Germinal Matrix	brain
19	chr5:147038200-147044400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:147038200-147047800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr5:147038200-147048600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:147038400-147041000	Strong transcription	Brain Cingulate Gyrus	brain
23	chr5:147038600-147042000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:147038600-147042200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:147038800-147040200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:147038800-147041600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr5:147038800-147052200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:147038800-147053200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:147039000-147040200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr5:147039000-147040400	Weak transcription	Primary T cells from cord blood	blood
31	chr5:147039000-147040400	Weak transcription	Lung	lung
32	chr5:147039000-147040800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr5:147039000-147041000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr5:147039000-147041000	Weak transcription	Brain Angular Gyrus	brain
35	chr5:147039000-147041200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:147039000-147041800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr5:147039000-147042600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:147039200-147040400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:147039200-147040400	Weak transcription	Fetal Lung	lung
40	chr5:147039200-147040400	Weak transcription	Fetal Stomach	stomach
41	chr5:147039200-147042200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr5:147039200-147047600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr5:147039200-147051200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr5:147039200-147052000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:147039400-147040200	Weak transcription	Brain Substantia Nigra	brain
46	chr5:147039400-147040200	Weak transcription	Thymus	Thymus
47	chr5:147039400-147040400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr5:147039600-147040200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr5:147039600-147042400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr5:147039600-147050600	Weak transcription	Primary T cells fromperipheralblood	blood

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