Variant report

Variant	rs17107113
Chromosome Location	chr5:147051797-147051798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1347137	1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs1347139	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1347140	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1432831	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17106902	0.89[EUR][1000 genomes]
rs17106906	0.89[EUR][1000 genomes]
rs17107055	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107069	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107091	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17107108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116764	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2116766	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs35456547	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58108907	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6859329	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs73268170	0.84[EUR][1000 genomes]
rs7703612	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7703708	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7737054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9918176	0.94[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147016400-147052400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:147025200-147053000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:147035800-147052800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:147038800-147052200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:147038800-147053200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:147039200-147052000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:147039600-147061800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:147041000-147052800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:147041000-147053000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:147046000-147052000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:147047000-147052800	Weak transcription	Stomach Mucosa	stomach
13	chr5:147048000-147052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:147048200-147051800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:147049000-147051800	Strong transcription	Primary hematopoietic stem cells	blood
16	chr5:147049000-147052000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:147049200-147053000	Weak transcription	Left Ventricle	heart
18	chr5:147049400-147051800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:147049400-147053000	Weak transcription	Gastric	stomach
20	chr5:147049400-147054000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:147049600-147052600	Weak transcription	Fetal Heart	heart
22	chr5:147050000-147051800	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:147051000-147052200	Weak transcription	Fetal Intestine Small	intestine
24	chr5:147051000-147054600	Enhancers	Liver	Liver
25	chr5:147051200-147052800	Weak transcription	Fetal Brain Male	brain
26	chr5:147051400-147052200	Weak transcription	Brain Anterior Caudate	brain
27	chr5:147051400-147052400	Weak transcription	Brain Angular Gyrus	brain
28	chr5:147051400-147052400	Weak transcription	Brain Substantia Nigra	brain
29	chr5:147051400-147052600	Weak transcription	Brain Hippocampus Middle	brain
30	chr5:147051400-147052800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr5:147051400-147053000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr5:147051400-147068200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:147051400-147070400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr5:147051400-147076600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr5:147051600-147052400	Weak transcription	Fetal Lung	lung
36	chr5:147051600-147052600	Weak transcription	Fetal Brain Female	brain
37	chr5:147051600-147052600	Weak transcription	Fetal Thymus	thymus
38	chr5:147051600-147052600	Weak transcription	Thymus	Thymus
39	chr5:147051600-147052800	Weak transcription	Brain Germinal Matrix	brain
40	chr5:147051600-147052800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr5:147051600-147052800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:147051600-147052800	Weak transcription	Fetal Stomach	stomach
43	chr5:147051600-147053000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:147051600-147053000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:147051600-147053200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr5:147051600-147053200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr5:147051600-147053400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:147051600-147057600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr5:147051600-147066600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr5:147051600-147075600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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