Variant report

Variant	rs17111264
Chromosome Location	chr1:94725620-94725621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17110991	1.00[EUR][1000 genomes]
rs1907468	1.00[EUR][1000 genomes]
rs2893294	1.00[EUR][1000 genomes]
rs6664460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6669316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6672837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684485	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544058	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94721600-94726400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94723000-94725800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:94723000-94725800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:94723000-94725800	Enhancers	HMEC	breast
5	chr1:94723000-94726800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:94723400-94726200	Enhancers	Osteobl	bone
7	chr1:94723400-94726800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:94723600-94726000	Enhancers	NH-A	brain
9	chr1:94723600-94726800	Enhancers	HSMM	muscle
10	chr1:94723600-94726800	Enhancers	NHDF-Ad	bronchial
11	chr1:94723800-94726600	Enhancers	HSMMtube	muscle
12	chr1:94724000-94725800	Enhancers	Adipose Nuclei	Adipose
13	chr1:94724000-94725800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:94724000-94725800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr1:94724000-94726200	Enhancers	NHLF	lung
16	chr1:94724000-94726400	Enhancers	HUVEC	blood vessel
17	chr1:94724200-94726000	Enhancers	HepG2	liver
18	chr1:94724400-94727000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:94724800-94726000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:94725000-94725800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr1:94725000-94725800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
22	chr1:94725000-94725800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:94725000-94725800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:94725000-94726600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr1:94725200-94726400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
26	chr1:94725200-94730600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:94725400-94725800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
28	chr1:94725400-94730200	Weak transcription	NHEK	skin
29	chr1:94725400-94730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:94725400-94730600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr1:94725400-94730800	Weak transcription	Psoas Muscle	Psoas
32	chr1:94725600-94725800	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
33	chr1:94725600-94725800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr1:94725600-94725800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
35	chr1:94725600-94725800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr1:94725600-94725800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
37	chr1:94725600-94725800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:94725600-94725800	Enhancers	Aorta	Aorta
39	chr1:94725600-94726000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:94725600-94730800	Weak transcription	A549	lung

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