Variant report

Variant	rs6669316
Chromosome Location	chr1:94727391-94727392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17110991	1.00[EUR][1000 genomes]
rs17111264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1907468	1.00[EUR][1000 genomes]
rs2893294	1.00[EUR][1000 genomes]
rs6664460	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6672837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544058	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94725200-94730600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:94725400-94730200	Weak transcription	NHEK	skin
3	chr1:94725400-94730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:94725400-94730600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:94725400-94730800	Weak transcription	Psoas Muscle	Psoas
6	chr1:94725600-94730800	Weak transcription	A549	lung
7	chr1:94725800-94730000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:94725800-94730200	Weak transcription	HMEC	breast
9	chr1:94725800-94730400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:94725800-94730600	Weak transcription	Adipose Nuclei	Adipose
11	chr1:94725800-94730800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:94725800-94742600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:94726000-94730400	Weak transcription	NH-A	brain
14	chr1:94726000-94731400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:94726200-94730200	Weak transcription	NHLF	lung
16	chr1:94726200-94730200	Weak transcription	Osteobl	bone
17	chr1:94726400-94729400	Weak transcription	HUVEC	blood vessel
18	chr1:94726400-94729800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:94726400-94729800	Weak transcription	Fetal Muscle Leg	muscle
20	chr1:94726600-94731000	Weak transcription	HSMMtube	muscle
21	chr1:94726800-94728600	Weak transcription	NHDF-Ad	bronchial
22	chr1:94726800-94729400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:94726800-94729600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:94726800-94730000	Weak transcription	HSMM	muscle
25	chr1:94726800-94730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:94727000-94730000	Weak transcription	Muscle Satellite Cultured Cells	--

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