Variant report

Variant	rs7544058
Chromosome Location	chr1:94784873-94784874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17111264	1.00[EUR][1000 genomes]
rs17111705	1.00[EUR][1000 genomes]
rs1907468	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2798926	1.00[EUR][1000 genomes]
rs2893294	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917644	1.00[EUR][1000 genomes]
rs6664460	1.00[EUR][1000 genomes]
rs6669316	1.00[EUR][1000 genomes]
rs6672837	1.00[EUR][1000 genomes]
rs6678421	1.00[EUR][1000 genomes]
rs6684485	1.00[EUR][1000 genomes]
rs72968367	1.00[EUR][1000 genomes]
rs841694	1.00[EUR][1000 genomes]
rs841698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94774600-94787800	Weak transcription	Aorta	Aorta
2	chr1:94776600-94785200	Weak transcription	Left Ventricle	heart
3	chr1:94776600-94790400	Weak transcription	Psoas Muscle	Psoas
4	chr1:94777000-94785000	Weak transcription	Right Atrium	heart
5	chr1:94777000-94785200	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:94778600-94790400	Weak transcription	Spleen	Spleen
7	chr1:94781400-94785800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:94781800-94785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:94782000-94785000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:94782000-94785200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:94782800-94789000	Weak transcription	Fetal Kidney	kidney
12	chr1:94783000-94789400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:94783200-94785000	Weak transcription	NHDF-Ad	bronchial
14	chr1:94783200-94786000	Enhancers	HepG2	liver
15	chr1:94783200-94787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:94783200-94787200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:94783200-94787200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:94783200-94787400	Weak transcription	HSMM	muscle
19	chr1:94783200-94787800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr1:94783200-94788400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:94783200-94792800	Weak transcription	Fetal Intestine Small	intestine
22	chr1:94783400-94785000	Weak transcription	NH-A	brain
23	chr1:94783400-94787400	Enhancers	A549	lung
24	chr1:94783600-94787000	Weak transcription	NHEK	skin
25	chr1:94783600-94787800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:94784000-94785000	Weak transcription	Fetal Heart	heart
27	chr1:94784000-94785600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:94784200-94785200	Weak transcription	Placenta	Placenta
29	chr1:94784200-94785600	Enhancers	Stomach Mucosa	stomach
30	chr1:94784200-94786000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr1:94784200-94787800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr1:94784400-94785200	Weak transcription	Adipose Nuclei	Adipose
33	chr1:94784400-94785200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:94784400-94785600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:94784400-94787800	Weak transcription	Lung	lung
36	chr1:94784400-94791000	Weak transcription	Gastric	stomach
37	chr1:94784600-94785000	Weak transcription	Pancreas	Pancrea
38	chr1:94784600-94785400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:94784600-94785800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr1:94784600-94785800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:94784800-94785000	Enhancers	Hela-S3	cervix
42	chr1:94784800-94785200	Enhancers	HMEC	breast
43	chr1:94784800-94785400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr1:94784800-94785400	Enhancers	Osteobl	bone
45	chr1:94784800-94785600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr1:94784800-94785800	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr1:94784800-94785800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr1:94784800-94785800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr1:94784800-94785800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:94784800-94785800	Enhancers	Cortex derived primary cultured neurospheres	brain

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