Variant report

Variant	rs2798926
Chromosome Location	chr1:95022160-95022161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11165172	1.00[EUR][1000 genomes]
rs1245486	1.00[AMR][1000 genomes]
rs1624081	1.00[MEX][hapmap]
rs17100426	1.00[MEX][hapmap]
rs17111705	1.00[EUR][1000 genomes]
rs1907468	1.00[EUR][1000 genomes]
rs2893294	1.00[EUR][1000 genomes]
rs3917644	1.00[EUR][1000 genomes]
rs6683092	1.00[MEX][hapmap]
rs72968367	1.00[EUR][1000 genomes]
rs7544058	1.00[EUR][1000 genomes]
rs841694	1.00[EUR][1000 genomes]
rs841698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95011600-95025400	Weak transcription	NHLF	lung
2	chr1:95014600-95022400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:95014800-95022200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:95014800-95022200	Enhancers	HMEC	breast
5	chr1:95015600-95022200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:95016600-95025000	Weak transcription	Right Atrium	heart
7	chr1:95019000-95028200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:95019000-95028200	Weak transcription	Pancreas	Pancrea
9	chr1:95019200-95025400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:95019200-95025400	Weak transcription	Stomach Mucosa	stomach
11	chr1:95019800-95023400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:95020000-95025200	Weak transcription	Ovary	ovary
13	chr1:95020000-95025400	Weak transcription	Fetal Intestine Large	intestine
14	chr1:95020400-95028200	Weak transcription	Fetal Intestine Small	intestine
15	chr1:95020600-95025400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr1:95020600-95025600	Weak transcription	HSMM	muscle
17	chr1:95020600-95028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:95020800-95023200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:95020800-95025200	Weak transcription	HSMMtube	muscle
20	chr1:95020800-95025400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:95021000-95025400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr1:95021000-95025600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:95021200-95025200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:95021200-95025400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:95021200-95025400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:95021200-95025400	Weak transcription	NHEK	skin
27	chr1:95021400-95027600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:95021600-95023800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:95021800-95025400	Weak transcription	Esophagus	oesophagus
30	chr1:95021800-95025400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:95022000-95025200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:95022000-95025400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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