Variant report

Variant	rs1907468
Chromosome Location	chr1:94855617-94855618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11165172	1.00[EUR][1000 genomes]
rs17111264	1.00[EUR][1000 genomes]
rs17111705	1.00[EUR][1000 genomes]
rs2798926	1.00[EUR][1000 genomes]
rs2893294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917644	1.00[EUR][1000 genomes]
rs6664460	1.00[EUR][1000 genomes]
rs6669316	1.00[EUR][1000 genomes]
rs6672837	1.00[EUR][1000 genomes]
rs6678421	1.00[EUR][1000 genomes]
rs6684485	1.00[EUR][1000 genomes]
rs72968367	1.00[EUR][1000 genomes]
rs7544058	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs841694	1.00[EUR][1000 genomes]
rs841698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94854200-94857000	Weak transcription	HepG2	liver
2	chr1:94855600-94859400	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links