Variant report

Variant	rs6664460
Chromosome Location	chr1:94730362-94730363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17110991	1.00[EUR][1000 genomes]
rs17111264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1907468	1.00[EUR][1000 genomes]
rs2893294	1.00[EUR][1000 genomes]
rs6669316	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6672837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544058	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94725200-94730600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:94725400-94730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:94725400-94730600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:94725400-94730800	Weak transcription	Psoas Muscle	Psoas
5	chr1:94725600-94730800	Weak transcription	A549	lung
6	chr1:94725800-94730400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:94725800-94730600	Weak transcription	Adipose Nuclei	Adipose
8	chr1:94725800-94730800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:94725800-94742600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:94726000-94730400	Weak transcription	NH-A	brain
11	chr1:94726000-94731400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:94726600-94731000	Weak transcription	HSMMtube	muscle
13	chr1:94726800-94730400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:94728600-94732400	Enhancers	NHDF-Ad	bronchial
15	chr1:94729400-94732200	Enhancers	HUVEC	blood vessel
16	chr1:94729400-94733200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:94729600-94730400	Enhancers	Fetal Heart	heart
18	chr1:94729600-94732600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:94729800-94732400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:94729800-94732400	Enhancers	Fetal Muscle Leg	muscle
21	chr1:94730000-94731600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr1:94730000-94731800	Enhancers	Spleen	Spleen
23	chr1:94730000-94731800	Enhancers	HSMM	muscle
24	chr1:94730000-94732200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:94730000-94732200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr1:94730200-94731000	Enhancers	Gastric	stomach
27	chr1:94730200-94731600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:94730200-94731800	Enhancers	NHEK	skin
29	chr1:94730200-94732000	Enhancers	NHLF	lung
30	chr1:94730200-94732000	Enhancers	Osteobl	bone
31	chr1:94730200-94732200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr1:94730200-94732200	Enhancers	HMEC	breast

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